J6_1NJM_001

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCC*GGGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

1NJM|1|0|A|200, 1NJM|1|0|A|242, 1NJM|1|0|A|443, 1NJM|1|0|U|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|G|44
1NJM|1|0|C|45
1NJM|1|0|C|46
*
1NJM|1|0|G|155
1NJM|1|0|G|156
1NJM|1|0|G|157
1NJM|1|0|A|158
1NJM|1|0|A|159
1NJM|1|0|C|160
*
1NJM|1|0|G|191
1NJM|1|0|G|192
1NJM|1|0|A|193
1NJM|1|0|G|194
1NJM|1|0|A|195
1NJM|1|0|A|196
1NJM|1|0|G|197
1NJM|1|0|A|198
1NJM|1|0|A|199
1NJM|1|0|A|200
1NJM|1|0|G|201
*
1NJM|1|0|C|208
1NJM|1|0|G|209
1NJM|1|0|A|210
1NJM|1|0|U|211
1NJM|1|0|U|212
*
1NJM|1|0|A|239
1NJM|1|0|U|240
1NJM|1|0|C|241
1NJM|1|0|A|242
1NJM|1|0|G|243
*
1NJM|1|0|C|439
1NJM|1|0|U|440
1NJM|1|0|A|441
1NJM|1|0|A|442
1NJM|1|0|A|443
1NJM|1|0|U|444
1NJM|1|0|A|445
1NJM|1|0|C|446

Current chains

Chain 0

23S ribosomal RNA

Nearby chains