J6_1NJM_002

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

1NJM|1|0|U|2059, 1NJM|1|0|G|2407, 1NJM|1|0|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|U|2057
1NJM|1|0|U|2058
1NJM|1|0|U|2059
1NJM|1|0|A|2060
*
1NJM|1|0|U|2222
1NJM|1|0|U|2223
1NJM|1|0|U|2224
1NJM|1|0|G|2225
*
1NJM|1|0|C|2237
1NJM|1|0|G|2238
*
1NJM|1|0|C|2260
1NJM|1|0|G|2261
1NJM|1|0|C|2262
1NJM|1|0|C|2263
*
1NJM|1|0|G|2363
1NJM|1|0|C|2364
1NJM|1|0|U|2365
1NJM|1|0|U|2366
1NJM|1|0|A|2367
1NJM|1|0|G|2368
1NJM|1|0|U|2369
1NJM|1|0|G|2370
1NJM|1|0|A|2371
1NJM|1|0|A|2372
1NJM|1|0|C|2373
1NJM|1|0|C|2374
*
1NJM|1|0|G|2400
1NJM|1|0|A|2401
1NJM|1|0|U|2402
1NJM|1|0|C|2403
1NJM|1|0|A|2404
1NJM|1|0|A|2405
1NJM|1|0|C|2406
1NJM|1|0|G|2407
1NJM|1|0|G|2408
1NJM|1|0|A|2409
1NJM|1|0|U|2410
1NJM|1|0|A|2411
1NJM|1|0|A|2412
1NJM|1|0|A|2413
1NJM|1|0|A|2414

Current chains

Chain 0

23S ribosomal RNA

Nearby chains