J6_1NJN_002

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

1NJN|1|0|U|2059, 1NJN|1|0|G|2407, 1NJN|1|0|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|U|2057
1NJN|1|0|U|2058
1NJN|1|0|U|2059
1NJN|1|0|A|2060
*
1NJN|1|0|U|2222
1NJN|1|0|U|2223
1NJN|1|0|U|2224
1NJN|1|0|G|2225
*
1NJN|1|0|C|2237
1NJN|1|0|G|2238
*
1NJN|1|0|C|2260
1NJN|1|0|G|2261
1NJN|1|0|C|2262
1NJN|1|0|C|2263
*
1NJN|1|0|G|2363
1NJN|1|0|C|2364
1NJN|1|0|U|2365
1NJN|1|0|U|2366
1NJN|1|0|A|2367
1NJN|1|0|G|2368
1NJN|1|0|U|2369
1NJN|1|0|G|2370
1NJN|1|0|A|2371
1NJN|1|0|A|2372
1NJN|1|0|C|2373
1NJN|1|0|C|2374
*
1NJN|1|0|G|2400
1NJN|1|0|A|2401
1NJN|1|0|U|2402
1NJN|1|0|C|2403
1NJN|1|0|A|2404
1NJN|1|0|A|2405
1NJN|1|0|C|2406
1NJN|1|0|G|2407
1NJN|1|0|G|2408
1NJN|1|0|A|2409
1NJN|1|0|U|2410
1NJN|1|0|A|2411
1NJN|1|0|A|2412
1NJN|1|0|A|2413
1NJN|1|0|A|2414

Current chains

Chain 0

23S ribosomal RNA

Nearby chains