J6_1NJN_003

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

1NJN|1|0|A|200, 1NJN|1|0|A|242, 1NJN|1|0|A|443, 1NJN|1|0|U|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|G|44
1NJN|1|0|C|45
*
1NJN|1|0|G|156
1NJN|1|0|G|157
1NJN|1|0|A|158
1NJN|1|0|A|159
1NJN|1|0|C|160
*
1NJN|1|0|G|191
1NJN|1|0|G|192
1NJN|1|0|A|193
1NJN|1|0|G|194
1NJN|1|0|A|195
1NJN|1|0|A|196
1NJN|1|0|G|197
1NJN|1|0|A|198
1NJN|1|0|A|199
1NJN|1|0|A|200
1NJN|1|0|G|201
*
1NJN|1|0|C|208
1NJN|1|0|G|209
1NJN|1|0|A|210
1NJN|1|0|U|211
1NJN|1|0|U|212
*
1NJN|1|0|A|239
1NJN|1|0|U|240
1NJN|1|0|C|241
1NJN|1|0|A|242
1NJN|1|0|G|243
*
1NJN|1|0|C|439
1NJN|1|0|U|440
1NJN|1|0|A|441
1NJN|1|0|A|442
1NJN|1|0|A|443
1NJN|1|0|U|444
1NJN|1|0|A|445
1NJN|1|0|C|446

Current chains

Chain 0

23S ribosomal RNA

Nearby chains