J6_1NJO_001

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCC*GGGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

1NJO|1|0|A|200, 1NJO|1|0|A|242, 1NJO|1|0|A|443, 1NJO|1|0|U|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|G|44
1NJO|1|0|C|45
1NJO|1|0|C|46
*
1NJO|1|0|G|155
1NJO|1|0|G|156
1NJO|1|0|G|157
1NJO|1|0|A|158
1NJO|1|0|A|159
1NJO|1|0|C|160
*
1NJO|1|0|G|191
1NJO|1|0|G|192
1NJO|1|0|A|193
1NJO|1|0|G|194
1NJO|1|0|A|195
1NJO|1|0|A|196
1NJO|1|0|G|197
1NJO|1|0|A|198
1NJO|1|0|A|199
1NJO|1|0|A|200
1NJO|1|0|G|201
*
1NJO|1|0|C|208
1NJO|1|0|G|209
1NJO|1|0|A|210
1NJO|1|0|U|211
1NJO|1|0|U|212
*
1NJO|1|0|A|239
1NJO|1|0|U|240
1NJO|1|0|C|241
1NJO|1|0|A|242
1NJO|1|0|G|243
*
1NJO|1|0|C|439
1NJO|1|0|U|440
1NJO|1|0|A|441
1NJO|1|0|A|442
1NJO|1|0|A|443
1NJO|1|0|U|444
1NJO|1|0|A|445
1NJO|1|0|C|446

Current chains

Chain 0

23S ribosomal RNA

Nearby chains