J6_1NJO_002

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

1NJO|1|0|U|2059, 1NJO|1|0|G|2407, 1NJO|1|0|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|U|2057
1NJO|1|0|U|2058
1NJO|1|0|U|2059
1NJO|1|0|A|2060
*
1NJO|1|0|U|2222
1NJO|1|0|U|2223
1NJO|1|0|U|2224
1NJO|1|0|G|2225
*
1NJO|1|0|C|2237
1NJO|1|0|G|2238
*
1NJO|1|0|C|2260
1NJO|1|0|G|2261
1NJO|1|0|C|2262
1NJO|1|0|C|2263
*
1NJO|1|0|G|2363
1NJO|1|0|C|2364
1NJO|1|0|U|2365
1NJO|1|0|U|2366
1NJO|1|0|A|2367
1NJO|1|0|G|2368
1NJO|1|0|U|2369
1NJO|1|0|G|2370
1NJO|1|0|A|2371
1NJO|1|0|A|2372
1NJO|1|0|C|2373
1NJO|1|0|C|2374
*
1NJO|1|0|G|2400
1NJO|1|0|A|2401
1NJO|1|0|U|2402
1NJO|1|0|C|2403
1NJO|1|0|A|2404
1NJO|1|0|A|2405
1NJO|1|0|C|2406
1NJO|1|0|G|2407
1NJO|1|0|G|2408
1NJO|1|0|A|2409
1NJO|1|0|U|2410
1NJO|1|0|A|2411
1NJO|1|0|A|2412
1NJO|1|0|A|2413
1NJO|1|0|A|2414

Current chains

Chain 0

23S ribosomal RNA

Nearby chains