J6_1NJP_001

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCC*GGGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

1NJP|1|0|A|200, 1NJP|1|0|A|242, 1NJP|1|0|A|443, 1NJP|1|0|U|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|G|44
1NJP|1|0|C|45
1NJP|1|0|C|46
*
1NJP|1|0|G|155
1NJP|1|0|G|156
1NJP|1|0|G|157
1NJP|1|0|A|158
1NJP|1|0|A|159
1NJP|1|0|C|160
*
1NJP|1|0|G|191
1NJP|1|0|G|192
1NJP|1|0|A|193
1NJP|1|0|G|194
1NJP|1|0|A|195
1NJP|1|0|A|196
1NJP|1|0|G|197
1NJP|1|0|A|198
1NJP|1|0|A|199
1NJP|1|0|A|200
1NJP|1|0|G|201
*
1NJP|1|0|C|208
1NJP|1|0|G|209
1NJP|1|0|A|210
1NJP|1|0|U|211
1NJP|1|0|U|212
*
1NJP|1|0|A|239
1NJP|1|0|U|240
1NJP|1|0|C|241
1NJP|1|0|A|242
1NJP|1|0|G|243
*
1NJP|1|0|C|439
1NJP|1|0|U|440
1NJP|1|0|A|441
1NJP|1|0|A|442
1NJP|1|0|A|443
1NJP|1|0|U|444
1NJP|1|0|A|445
1NJP|1|0|C|446

Current chains

Chain 0

23S ribosomal RNA

Nearby chains