J6_1NJP_002

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

1NJP|1|0|U|2059, 1NJP|1|0|G|2407, 1NJP|1|0|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|U|2057
1NJP|1|0|U|2058
1NJP|1|0|U|2059
1NJP|1|0|A|2060
*
1NJP|1|0|U|2222
1NJP|1|0|U|2223
1NJP|1|0|U|2224
1NJP|1|0|G|2225
*
1NJP|1|0|C|2237
1NJP|1|0|G|2238
*
1NJP|1|0|C|2260
1NJP|1|0|G|2261
1NJP|1|0|C|2262
1NJP|1|0|C|2263
*
1NJP|1|0|G|2363
1NJP|1|0|C|2364
1NJP|1|0|U|2365
1NJP|1|0|U|2366
1NJP|1|0|A|2367
1NJP|1|0|G|2368
1NJP|1|0|U|2369
1NJP|1|0|G|2370
1NJP|1|0|A|2371
1NJP|1|0|A|2372
1NJP|1|0|C|2373
1NJP|1|0|C|2374
*
1NJP|1|0|G|2400
1NJP|1|0|A|2401
1NJP|1|0|U|2402
1NJP|1|0|C|2403
1NJP|1|0|A|2404
1NJP|1|0|A|2405
1NJP|1|0|C|2406
1NJP|1|0|G|2407
1NJP|1|0|G|2408
1NJP|1|0|A|2409
1NJP|1|0|U|2410
1NJP|1|0|A|2411
1NJP|1|0|A|2412
1NJP|1|0|A|2413
1NJP|1|0|A|2414

Current chains

Chain 0

23S ribosomal RNA

Nearby chains