J6_1OND_001

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

1OND|1|0|A|200, 1OND|1|0|A|242, 1OND|1|0|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|G|44
1OND|1|0|C|45
*
1OND|1|0|G|156
1OND|1|0|G|157
1OND|1|0|A|158
1OND|1|0|A|159
1OND|1|0|C|160
*
1OND|1|0|G|191
1OND|1|0|G|192
1OND|1|0|A|193
1OND|1|0|G|194
1OND|1|0|A|195
1OND|1|0|A|196
1OND|1|0|G|197
1OND|1|0|A|198
1OND|1|0|A|199
1OND|1|0|A|200
1OND|1|0|G|201
*
1OND|1|0|C|208
1OND|1|0|G|209
1OND|1|0|A|210
1OND|1|0|U|211
1OND|1|0|U|212
*
1OND|1|0|A|239
1OND|1|0|U|240
1OND|1|0|C|241
1OND|1|0|A|242
1OND|1|0|G|243
*
1OND|1|0|C|439
1OND|1|0|U|440
1OND|1|0|A|441
1OND|1|0|A|442
1OND|1|0|A|443
1OND|1|0|U|444
1OND|1|0|A|445
1OND|1|0|C|446

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains