J6_1OND_002

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUAC*GUUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

43 nucleotides

Bulged bases

1OND|1|0|U|2059, 1OND|1|0|A|2405, 1OND|1|0|G|2407, 1OND|1|0|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|U|2057
1OND|1|0|U|2058
1OND|1|0|U|2059
1OND|1|0|A|2060
1OND|1|0|C|2061
*
1OND|1|0|G|2221
1OND|1|0|U|2222
1OND|1|0|U|2223
1OND|1|0|U|2224
1OND|1|0|G|2225
*
1OND|1|0|C|2237
1OND|1|0|G|2238
*
1OND|1|0|C|2260
1OND|1|0|G|2261
1OND|1|0|C|2262
1OND|1|0|C|2263
*
1OND|1|0|G|2363
1OND|1|0|C|2364
1OND|1|0|U|2365
1OND|1|0|U|2366
1OND|1|0|A|2367
1OND|1|0|G|2368
1OND|1|0|U|2369
1OND|1|0|G|2370
1OND|1|0|A|2371
1OND|1|0|A|2372
1OND|1|0|C|2373
1OND|1|0|C|2374
*
1OND|1|0|G|2400
1OND|1|0|A|2401
1OND|1|0|U|2402
1OND|1|0|C|2403
1OND|1|0|A|2404
1OND|1|0|A|2405
1OND|1|0|C|2406
1OND|1|0|G|2407
1OND|1|0|G|2408
1OND|1|0|A|2409
1OND|1|0|U|2410
1OND|1|0|A|2411
1OND|1|0|A|2412
1OND|1|0|A|2413
1OND|1|0|A|2414

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains