Loop J6_1Q81

3D structure

PDB id: 1Q81 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GUCUAGCGAACCA*UGAUGACAGAAAA
Length: 40 nucleotides
Bulged bases: 1Q81|1|A|U|2117, 1Q81|1|A|A|2425, 1Q81|1|A|A|2465, 1Q81|1|A|A|2467, 1Q81|1|A|A|2468
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1Q81|1|A|U|2115
1Q81|1|A|U|2116
1Q81|1|A|U|2117
1Q81|1|A|A|2118
*
1Q81|1|A|U|2276
1Q81|1|A|U|2277
1Q81|1|A|U|2278
1Q81|1|A|G|2279
*
1Q81|1|A|C|2292
1Q81|1|A|G|2293
*
1Q81|1|A|C|2315
1Q81|1|A|G|2316
1Q81|1|A|C|2317
1Q81|1|A|C|2318
*
1Q81|1|A|G|2421
1Q81|1|A|U|2422
1Q81|1|A|C|2423
1Q81|1|A|U|2424
1Q81|1|A|A|2425
1Q81|1|A|G|2426
1Q81|1|A|C|2427
1Q81|1|A|G|2428
1Q81|1|A|A|2429
1Q81|1|A|A|2430
1Q81|1|A|C|2431
1Q81|1|A|C|2432
1Q81|1|A|A|2433
*
1Q81|1|A|U|2458
1Q81|1|A|G|2459
1Q81|1|A|A|2460
1Q81|1|A|U|2461
1Q81|1|A|G|2462
1Q81|1|A|A|2463
1Q81|1|A|C|2464
1Q81|1|A|A|2465
1Q81|1|A|G|2466
1Q81|1|A|A|2467
1Q81|1|A|A|2468
1Q81|1|A|A|2469
1Q81|1|A|A|2470

Current chains

Chain A: 23S ribosomal rna

Nearby chains

Chain 4: 50S ribosomal protein L44E
Chain C: 50S ribosomal protein L2P
Chain M: 50S ribosomal protein L15P
Chain N: L15 Ribosomal Protein
Chain R: 50S ribosomal protein L21e

J6_1Q81_002