Loop J6_1Q86

3D structure

PDB id: 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA
Length: 38 nucleotides
Bulged bases: 1Q86|1|A|U|2117, 1Q86|1|A|A|2425, 1Q86|1|A|A|2465, 1Q86|1|A|A|2467, 1Q86|1|A|A|2468
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1Q86|1|A|U|2115
1Q86|1|A|U|2116
1Q86|1|A|U|2117
1Q86|1|A|A|2118
*
1Q86|1|A|U|2276
1Q86|1|A|U|2277
1Q86|1|A|U|2278
1Q86|1|A|G|2279
*
1Q86|1|A|C|2292
1Q86|1|A|G|2293
*
1Q86|1|A|C|2315
1Q86|1|A|G|2316
1Q86|1|A|C|2317
1Q86|1|A|C|2318
*
1Q86|1|A|G|2421
1Q86|1|A|U|2422
1Q86|1|A|C|2423
1Q86|1|A|U|2424
1Q86|1|A|A|2425
1Q86|1|A|G|2426
1Q86|1|A|C|2427
1Q86|1|A|G|2428
1Q86|1|A|A|2429
1Q86|1|A|A|2430
1Q86|1|A|C|2431
1Q86|1|A|C|2432
*
1Q86|1|A|G|2459
1Q86|1|A|A|2460
1Q86|1|A|U|2461
1Q86|1|A|G|2462
1Q86|1|A|A|2463
1Q86|1|A|C|2464
1Q86|1|A|A|2465
1Q86|1|A|G|2466
1Q86|1|A|A|2467
1Q86|1|A|A|2468
1Q86|1|A|A|2469
1Q86|1|A|A|2470

Current chains

Chain A: 23S ribosomal rna

Nearby chains

Chain 4: 50S ribosomal protein L44E
Chain C: 50S ribosomal protein L2P
Chain M: 50S ribosomal protein L15P
Chain N: L15 Ribosomal Protein
Chain R: 50S ribosomal protein L21e

J6_1Q86_002