J6_1QVF_001

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1QVF|1|0|A|193, 1QVF|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1QVF|1|0|G|41
1QVF|1|0|C|42
*
1QVF|1|0|G|149
1QVF|1|0|G|150
1QVF|1|0|A|151
1QVF|1|0|A|152
1QVF|1|0|C|153
*
1QVF|1|0|G|184
1QVF|1|0|G|185
1QVF|1|0|A|186
1QVF|1|0|A|187
1QVF|1|0|C|188
1QVF|1|0|A|189
1QVF|1|0|G|190
1QVF|1|0|A|191
1QVF|1|0|A|192
1QVF|1|0|A|193
1QVF|1|0|A|194
*
1QVF|1|0|U|202
1QVF|1|0|G|203
1QVF|1|0|A|204
1QVF|1|0|U|205
1QVF|1|0|G|206
*
1QVF|1|0|U|233
1QVF|1|0|A|234
1QVF|1|0|C|235
1QVF|1|0|A|236
1QVF|1|0|G|237
*
1QVF|1|0|C|433
1QVF|1|0|U|434
1QVF|1|0|A|435
1QVF|1|0|A|436
1QVF|1|0|A|437
1QVF|1|0|C|438
1QVF|1|0|A|439
1QVF|1|0|C|440

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain L

L15 Ribosomal Protein

Chain Z

50S ribosomal protein L37e