J6_1SM1_001

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

1SM1|1|0|A|200, 1SM1|1|0|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|G|44
1SM1|1|0|C|45
*
1SM1|1|0|G|156
1SM1|1|0|G|157
1SM1|1|0|A|158
1SM1|1|0|A|159
1SM1|1|0|C|160
*
1SM1|1|0|G|191
1SM1|1|0|G|192
1SM1|1|0|A|193
1SM1|1|0|G|194
1SM1|1|0|A|195
1SM1|1|0|A|196
1SM1|1|0|G|197
1SM1|1|0|A|198
1SM1|1|0|A|199
1SM1|1|0|A|200
1SM1|1|0|G|201
*
1SM1|1|0|C|208
1SM1|1|0|G|209
1SM1|1|0|A|210
1SM1|1|0|U|211
1SM1|1|0|U|212
*
1SM1|1|0|A|239
1SM1|1|0|U|240
1SM1|1|0|C|241
1SM1|1|0|A|242
1SM1|1|0|G|243
*
1SM1|1|0|C|439
1SM1|1|0|U|440
1SM1|1|0|A|441
1SM1|1|0|A|442
1SM1|1|0|A|443
1SM1|1|0|U|444
1SM1|1|0|A|445
1SM1|1|0|C|446

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34