J6_1SM1_002
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- UUUAC*GUUUG*CG*CGCCC*GGCUUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 45 nucleotides
- Bulged bases
- 1SM1|1|0|U|2059, 1SM1|1|0|U|2402, 1SM1|1|0|G|2407, 1SM1|1|0|A|2409, 1SM1|1|0|U|2410, 1SM1|1|0|A|2413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1SM1|1|0|U|2057
1SM1|1|0|U|2058
1SM1|1|0|U|2059
1SM1|1|0|A|2060
1SM1|1|0|C|2061
*
1SM1|1|0|G|2221
1SM1|1|0|U|2222
1SM1|1|0|U|2223
1SM1|1|0|U|2224
1SM1|1|0|G|2225
*
1SM1|1|0|C|2237
1SM1|1|0|G|2238
*
1SM1|1|0|C|2260
1SM1|1|0|G|2261
1SM1|1|0|C|2262
1SM1|1|0|C|2263
1SM1|1|0|C|2264
*
1SM1|1|0|G|2362
1SM1|1|0|G|2363
1SM1|1|0|C|2364
1SM1|1|0|U|2365
1SM1|1|0|U|2366
1SM1|1|0|A|2367
1SM1|1|0|G|2368
1SM1|1|0|U|2369
1SM1|1|0|G|2370
1SM1|1|0|A|2371
1SM1|1|0|A|2372
1SM1|1|0|C|2373
1SM1|1|0|C|2374
*
1SM1|1|0|G|2400
1SM1|1|0|A|2401
1SM1|1|0|U|2402
1SM1|1|0|C|2403
1SM1|1|0|A|2404
1SM1|1|0|A|2405
1SM1|1|0|C|2406
1SM1|1|0|G|2407
1SM1|1|0|G|2408
1SM1|1|0|A|2409
1SM1|1|0|U|2410
1SM1|1|0|A|2411
1SM1|1|0|A|2412
1SM1|1|0|A|2413
1SM1|1|0|A|2414
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 1
- 50S RIBOSOMAL PROTEIN L33
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain A
- 50S RIBOSOMAL PROTEIN L2
- Chain J
- 50S RIBOSOMAL PROTEIN L15
- Chain U
- 50S RIBOSOMAL PROTEIN L27
- Chain Y
- 50S RIBOSOMAL PROTEIN L31
Coloring options: