J6_1VQ4_001

3D structure

PDB id

1VQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAA' bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1VQ4|1|0|A|193, 1VQ4|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQ4|1|0|G|41
1VQ4|1|0|C|42
*
1VQ4|1|0|G|149
1VQ4|1|0|G|150
1VQ4|1|0|A|151
1VQ4|1|0|A|152
1VQ4|1|0|C|153
*
1VQ4|1|0|G|184
1VQ4|1|0|G|185
1VQ4|1|0|A|186
1VQ4|1|0|A|187
1VQ4|1|0|C|188
1VQ4|1|0|A|189
1VQ4|1|0|G|190
1VQ4|1|0|A|191
1VQ4|1|0|A|192
1VQ4|1|0|A|193
1VQ4|1|0|A|194
*
1VQ4|1|0|U|202
1VQ4|1|0|G|203
1VQ4|1|0|A|204
1VQ4|1|0|U|205
1VQ4|1|0|G|206
*
1VQ4|1|0|U|233
1VQ4|1|0|A|234
1VQ4|1|0|C|235
1VQ4|1|0|A|236
1VQ4|1|0|G|237
*
1VQ4|1|0|C|433
1VQ4|1|0|U|434
1VQ4|1|0|A|435
1VQ4|1|0|A|436
1VQ4|1|0|A|437
1VQ4|1|0|C|438
1VQ4|1|0|A|439
1VQ4|1|0|C|440

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain M

50S Ribosomal Protein L15E