J6_1VQ5_001

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1VQ5|1|0|A|193, 1VQ5|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQ5|1|0|G|41
1VQ5|1|0|C|42
*
1VQ5|1|0|G|149
1VQ5|1|0|G|150
1VQ5|1|0|A|151
1VQ5|1|0|A|152
1VQ5|1|0|C|153
*
1VQ5|1|0|G|184
1VQ5|1|0|G|185
1VQ5|1|0|A|186
1VQ5|1|0|A|187
1VQ5|1|0|C|188
1VQ5|1|0|A|189
1VQ5|1|0|G|190
1VQ5|1|0|A|191
1VQ5|1|0|A|192
1VQ5|1|0|A|193
1VQ5|1|0|A|194
*
1VQ5|1|0|U|202
1VQ5|1|0|G|203
1VQ5|1|0|A|204
1VQ5|1|0|U|205
1VQ5|1|0|G|206
*
1VQ5|1|0|U|233
1VQ5|1|0|A|234
1VQ5|1|0|C|235
1VQ5|1|0|A|236
1VQ5|1|0|G|237
*
1VQ5|1|0|C|433
1VQ5|1|0|U|434
1VQ5|1|0|A|435
1VQ5|1|0|A|436
1VQ5|1|0|A|437
1VQ5|1|0|C|438
1VQ5|1|0|A|439
1VQ5|1|0|C|440

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain M

50S Ribosomal Protein L15E