J6_1VQ6_001

3D structure

PDB id

1VQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1VQ6|1|0|A|193, 1VQ6|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQ6|1|0|G|41
1VQ6|1|0|C|42
*
1VQ6|1|0|G|149
1VQ6|1|0|G|150
1VQ6|1|0|A|151
1VQ6|1|0|A|152
1VQ6|1|0|C|153
*
1VQ6|1|0|G|184
1VQ6|1|0|G|185
1VQ6|1|0|A|186
1VQ6|1|0|A|187
1VQ6|1|0|C|188
1VQ6|1|0|A|189
1VQ6|1|0|G|190
1VQ6|1|0|A|191
1VQ6|1|0|A|192
1VQ6|1|0|A|193
1VQ6|1|0|A|194
*
1VQ6|1|0|U|202
1VQ6|1|0|G|203
1VQ6|1|0|A|204
1VQ6|1|0|U|205
1VQ6|1|0|G|206
*
1VQ6|1|0|U|233
1VQ6|1|0|A|234
1VQ6|1|0|C|235
1VQ6|1|0|A|236
1VQ6|1|0|G|237
*
1VQ6|1|0|C|433
1VQ6|1|0|U|434
1VQ6|1|0|A|435
1VQ6|1|0|A|436
1VQ6|1|0|A|437
1VQ6|1|0|C|438
1VQ6|1|0|A|439
1VQ6|1|0|C|440

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain M

50S Ribosomal Protein L15E