J6_1VQ6_002

3D structure

PDB id

1VQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1VQ6|1|0|U|2117, 1VQ6|1|0|A|2425, 1VQ6|1|0|C|2427, 1VQ6|1|0|A|2465, 1VQ6|1|0|A|2467, 1VQ6|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQ6|1|0|U|2115
1VQ6|1|0|U|2116
1VQ6|1|0|U|2117
1VQ6|1|0|A|2118
*
1VQ6|1|0|U|2276
1VQ6|1|0|U|2277
1VQ6|1|0|U|2278
1VQ6|1|0|G|2279
*
1VQ6|1|0|C|2292
1VQ6|1|0|G|2293
*
1VQ6|1|0|C|2315
1VQ6|1|0|G|2316
1VQ6|1|0|C|2317
1VQ6|1|0|C|2318
*
1VQ6|1|0|G|2421
1VQ6|1|0|U|2422
1VQ6|1|0|C|2423
1VQ6|1|0|U|2424
1VQ6|1|0|A|2425
1VQ6|1|0|G|2426
1VQ6|1|0|C|2427
1VQ6|1|0|G|2428
1VQ6|1|0|A|2429
1VQ6|1|0|A|2430
1VQ6|1|0|C|2431
1VQ6|1|0|C|2432
*
1VQ6|1|0|G|2459
1VQ6|1|0|A|2460
1VQ6|1|0|U|2461
1VQ6|1|0|G|2462
1VQ6|1|0|A|2463
1VQ6|1|0|C|2464
1VQ6|1|0|A|2465
1VQ6|1|0|G|2466
1VQ6|1|0|A|2467
1VQ6|1|0|A|2468
1VQ6|1|0|A|2469
1VQ6|1|0|A|2470

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e