J6_1VQ7_001

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1VQ7|1|0|A|193, 1VQ7|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQ7|1|0|G|41
1VQ7|1|0|C|42
*
1VQ7|1|0|G|149
1VQ7|1|0|G|150
1VQ7|1|0|A|151
1VQ7|1|0|A|152
1VQ7|1|0|C|153
*
1VQ7|1|0|G|184
1VQ7|1|0|G|185
1VQ7|1|0|A|186
1VQ7|1|0|A|187
1VQ7|1|0|C|188
1VQ7|1|0|A|189
1VQ7|1|0|G|190
1VQ7|1|0|A|191
1VQ7|1|0|A|192
1VQ7|1|0|A|193
1VQ7|1|0|A|194
*
1VQ7|1|0|U|202
1VQ7|1|0|G|203
1VQ7|1|0|A|204
1VQ7|1|0|U|205
1VQ7|1|0|G|206
*
1VQ7|1|0|U|233
1VQ7|1|0|A|234
1VQ7|1|0|C|235
1VQ7|1|0|A|236
1VQ7|1|0|G|237
*
1VQ7|1|0|C|433
1VQ7|1|0|U|434
1VQ7|1|0|A|435
1VQ7|1|0|A|436
1VQ7|1|0|A|437
1VQ7|1|0|C|438
1VQ7|1|0|A|439
1VQ7|1|0|C|440

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain M

50S Ribosomal Protein L15E