J6_1VQK_001
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC
- Length
- 36 nucleotides
- Bulged bases
- 1VQK|1|0|A|193, 1VQK|1|0|C|438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VQK|1|0|G|41
1VQK|1|0|C|42
*
1VQK|1|0|G|149
1VQK|1|0|G|150
1VQK|1|0|A|151
1VQK|1|0|A|152
1VQK|1|0|C|153
*
1VQK|1|0|G|184
1VQK|1|0|G|185
1VQK|1|0|A|186
1VQK|1|0|A|187
1VQK|1|0|C|188
1VQK|1|0|A|189
1VQK|1|0|G|190
1VQK|1|0|A|191
1VQK|1|0|A|192
1VQK|1|0|A|193
1VQK|1|0|A|194
*
1VQK|1|0|U|202
1VQK|1|0|G|203
1VQK|1|0|A|204
1VQK|1|0|U|205
1VQK|1|0|G|206
*
1VQK|1|0|U|233
1VQK|1|0|A|234
1VQK|1|0|C|235
1VQK|1|0|A|236
1VQK|1|0|G|237
*
1VQK|1|0|C|433
1VQK|1|0|U|434
1VQK|1|0|A|435
1VQK|1|0|A|436
1VQK|1|0|A|437
1VQK|1|0|C|438
1VQK|1|0|A|439
1VQK|1|0|C|440
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain C
- 50S ribosomal protein L4E
- Chain M
- 50S Ribosomal Protein L15E
Coloring options: