J6_1VQK_002

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1VQK|1|0|U|2117, 1VQK|1|0|A|2425, 1VQK|1|0|C|2427, 1VQK|1|0|A|2465, 1VQK|1|0|A|2467, 1VQK|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQK|1|0|U|2115
1VQK|1|0|U|2116
1VQK|1|0|U|2117
1VQK|1|0|A|2118
*
1VQK|1|0|U|2276
1VQK|1|0|U|2277
1VQK|1|0|U|2278
1VQK|1|0|G|2279
*
1VQK|1|0|C|2292
1VQK|1|0|G|2293
*
1VQK|1|0|C|2315
1VQK|1|0|G|2316
1VQK|1|0|C|2317
1VQK|1|0|C|2318
*
1VQK|1|0|G|2421
1VQK|1|0|U|2422
1VQK|1|0|C|2423
1VQK|1|0|U|2424
1VQK|1|0|A|2425
1VQK|1|0|G|2426
1VQK|1|0|C|2427
1VQK|1|0|G|2428
1VQK|1|0|A|2429
1VQK|1|0|A|2430
1VQK|1|0|C|2431
1VQK|1|0|C|2432
*
1VQK|1|0|G|2459
1VQK|1|0|A|2460
1VQK|1|0|U|2461
1VQK|1|0|G|2462
1VQK|1|0|A|2463
1VQK|1|0|C|2464
1VQK|1|0|A|2465
1VQK|1|0|G|2466
1VQK|1|0|A|2467
1VQK|1|0|A|2468
1VQK|1|0|A|2469
1VQK|1|0|A|2470

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e