J6_1VQL_001

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1VQL|1|0|A|193, 1VQL|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQL|1|0|G|41
1VQL|1|0|C|42
*
1VQL|1|0|G|149
1VQL|1|0|G|150
1VQL|1|0|A|151
1VQL|1|0|A|152
1VQL|1|0|C|153
*
1VQL|1|0|G|184
1VQL|1|0|G|185
1VQL|1|0|A|186
1VQL|1|0|A|187
1VQL|1|0|C|188
1VQL|1|0|A|189
1VQL|1|0|G|190
1VQL|1|0|A|191
1VQL|1|0|A|192
1VQL|1|0|A|193
1VQL|1|0|A|194
*
1VQL|1|0|U|202
1VQL|1|0|G|203
1VQL|1|0|A|204
1VQL|1|0|U|205
1VQL|1|0|G|206
*
1VQL|1|0|U|233
1VQL|1|0|A|234
1VQL|1|0|C|235
1VQL|1|0|A|236
1VQL|1|0|G|237
*
1VQL|1|0|C|433
1VQL|1|0|U|434
1VQL|1|0|A|435
1VQL|1|0|A|436
1VQL|1|0|A|437
1VQL|1|0|C|438
1VQL|1|0|A|439
1VQL|1|0|C|440

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain M

50S Ribosomal Protein L15E