J6_1VQL_002

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1VQL|1|0|U|2117, 1VQL|1|0|A|2425, 1VQL|1|0|A|2465, 1VQL|1|0|A|2467, 1VQL|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQL|1|0|U|2115
1VQL|1|0|U|2116
1VQL|1|0|U|2117
1VQL|1|0|A|2118
*
1VQL|1|0|U|2276
1VQL|1|0|U|2277
1VQL|1|0|U|2278
1VQL|1|0|G|2279
*
1VQL|1|0|C|2292
1VQL|1|0|G|2293
*
1VQL|1|0|C|2315
1VQL|1|0|G|2316
1VQL|1|0|C|2317
1VQL|1|0|C|2318
*
1VQL|1|0|G|2421
1VQL|1|0|U|2422
1VQL|1|0|C|2423
1VQL|1|0|U|2424
1VQL|1|0|A|2425
1VQL|1|0|G|2426
1VQL|1|0|C|2427
1VQL|1|0|G|2428
1VQL|1|0|A|2429
1VQL|1|0|A|2430
1VQL|1|0|C|2431
1VQL|1|0|C|2432
*
1VQL|1|0|G|2459
1VQL|1|0|A|2460
1VQL|1|0|U|2461
1VQL|1|0|G|2462
1VQL|1|0|A|2463
1VQL|1|0|C|2464
1VQL|1|0|A|2465
1VQL|1|0|G|2466
1VQL|1|0|A|2467
1VQL|1|0|A|2468
1VQL|1|0|A|2469
1VQL|1|0|A|2470

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e