J6_1VQN_002

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1VQN|1|0|U|2117, 1VQN|1|0|A|2425, 1VQN|1|0|A|2465, 1VQN|1|0|A|2467, 1VQN|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQN|1|0|U|2115
1VQN|1|0|U|2116
1VQN|1|0|U|2117
1VQN|1|0|A|2118
*
1VQN|1|0|U|2276
1VQN|1|0|U|2277
1VQN|1|0|U|2278
1VQN|1|0|G|2279
*
1VQN|1|0|C|2292
1VQN|1|0|G|2293
*
1VQN|1|0|C|2315
1VQN|1|0|G|2316
1VQN|1|0|C|2317
1VQN|1|0|C|2318
*
1VQN|1|0|G|2421
1VQN|1|0|U|2422
1VQN|1|0|C|2423
1VQN|1|0|U|2424
1VQN|1|0|A|2425
1VQN|1|0|G|2426
1VQN|1|0|C|2427
1VQN|1|0|G|2428
1VQN|1|0|A|2429
1VQN|1|0|A|2430
1VQN|1|0|C|2431
1VQN|1|0|C|2432
*
1VQN|1|0|G|2459
1VQN|1|0|A|2460
1VQN|1|0|U|2461
1VQN|1|0|G|2462
1VQN|1|0|A|2463
1VQN|1|0|C|2464
1VQN|1|0|A|2465
1VQN|1|0|G|2466
1VQN|1|0|A|2467
1VQN|1|0|A|2468
1VQN|1|0|A|2469
1VQN|1|0|A|2470

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e