J6_1VQO_002

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1VQO|1|0|U|2117, 1VQO|1|0|A|2425, 1VQO|1|0|A|2465, 1VQO|1|0|A|2467, 1VQO|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQO|1|0|U|2115
1VQO|1|0|U|2116
1VQO|1|0|U|2117
1VQO|1|0|A|2118
*
1VQO|1|0|U|2276
1VQO|1|0|U|2277
1VQO|1|0|U|2278
1VQO|1|0|G|2279
*
1VQO|1|0|C|2292
1VQO|1|0|G|2293
*
1VQO|1|0|C|2315
1VQO|1|0|G|2316
1VQO|1|0|C|2317
1VQO|1|0|C|2318
*
1VQO|1|0|G|2421
1VQO|1|0|U|2422
1VQO|1|0|C|2423
1VQO|1|0|U|2424
1VQO|1|0|A|2425
1VQO|1|0|G|2426
1VQO|1|0|C|2427
1VQO|1|0|G|2428
1VQO|1|0|A|2429
1VQO|1|0|A|2430
1VQO|1|0|C|2431
1VQO|1|0|C|2432
*
1VQO|1|0|G|2459
1VQO|1|0|A|2460
1VQO|1|0|U|2461
1VQO|1|0|G|2462
1VQO|1|0|A|2463
1VQO|1|0|C|2464
1VQO|1|0|A|2465
1VQO|1|0|G|2466
1VQO|1|0|A|2467
1VQO|1|0|A|2468
1VQO|1|0|A|2469
1VQO|1|0|A|2470

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e