3D structure

PDB id
1VQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.25 Å

Loop

Sequence
GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC
Length
36 nucleotides
Bulged bases
1VQP|1|0|A|193, 1VQP|1|0|C|438
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VQP|1|0|G|41
1VQP|1|0|C|42
*
1VQP|1|0|G|149
1VQP|1|0|G|150
1VQP|1|0|A|151
1VQP|1|0|A|152
1VQP|1|0|C|153
*
1VQP|1|0|G|184
1VQP|1|0|G|185
1VQP|1|0|A|186
1VQP|1|0|A|187
1VQP|1|0|C|188
1VQP|1|0|A|189
1VQP|1|0|G|190
1VQP|1|0|A|191
1VQP|1|0|A|192
1VQP|1|0|A|193
1VQP|1|0|A|194
*
1VQP|1|0|U|202
1VQP|1|0|G|203
1VQP|1|0|A|204
1VQP|1|0|U|205
1VQP|1|0|G|206
*
1VQP|1|0|U|233
1VQP|1|0|A|234
1VQP|1|0|C|235
1VQP|1|0|A|236
1VQP|1|0|G|237
*
1VQP|1|0|C|433
1VQP|1|0|U|434
1VQP|1|0|A|435
1VQP|1|0|A|436
1VQP|1|0|A|437
1VQP|1|0|C|438
1VQP|1|0|A|439
1VQP|1|0|C|440

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 1
50S ribosomal protein L37e
Chain C
50S ribosomal protein L4E
Chain M
50S Ribosomal Protein L15E

Coloring options:

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