J6_1VQP_002

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1VQP|1|0|U|2117, 1VQP|1|0|A|2425, 1VQP|1|0|A|2465, 1VQP|1|0|A|2467, 1VQP|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQP|1|0|U|2115
1VQP|1|0|U|2116
1VQP|1|0|U|2117
1VQP|1|0|A|2118
*
1VQP|1|0|U|2276
1VQP|1|0|U|2277
1VQP|1|0|U|2278
1VQP|1|0|G|2279
*
1VQP|1|0|C|2292
1VQP|1|0|G|2293
*
1VQP|1|0|C|2315
1VQP|1|0|G|2316
1VQP|1|0|C|2317
1VQP|1|0|C|2318
*
1VQP|1|0|G|2421
1VQP|1|0|U|2422
1VQP|1|0|C|2423
1VQP|1|0|U|2424
1VQP|1|0|A|2425
1VQP|1|0|G|2426
1VQP|1|0|C|2427
1VQP|1|0|G|2428
1VQP|1|0|A|2429
1VQP|1|0|A|2430
1VQP|1|0|C|2431
1VQP|1|0|C|2432
*
1VQP|1|0|G|2459
1VQP|1|0|A|2460
1VQP|1|0|U|2461
1VQP|1|0|G|2462
1VQP|1|0|A|2463
1VQP|1|0|C|2464
1VQP|1|0|A|2465
1VQP|1|0|G|2466
1VQP|1|0|A|2467
1VQP|1|0|A|2468
1VQP|1|0|A|2469
1VQP|1|0|A|2470

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e