3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
1VVJ|1|RA|U|2076, 1VVJ|1|RA|A|2388, 1VVJ|1|RA|U|2390, 1VVJ|1|RA|G|2428, 1VVJ|1|RA|A|2430, 1VVJ|1|RA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VVJ|1|RA|U|2074
1VVJ|1|RA|U|2075
1VVJ|1|RA|U|2076
1VVJ|1|RA|A|2077
*
1VVJ|1|RA|U|2243
1VVJ|1|RA|U|2244
1VVJ|1|RA|U|2245
1VVJ|1|RA|G|2246
*
1VVJ|1|RA|C|2258
1VVJ|1|RA|G|2259
*
1VVJ|1|RA|C|2281
1VVJ|1|RA|G|2282
1VVJ|1|RA|C|2283
1VVJ|1|RA|C|2284
*
1VVJ|1|RA|G|2384
1VVJ|1|RA|C|2385
1VVJ|1|RA|C|2386
1VVJ|1|RA|U|2387
1VVJ|1|RA|A|2388
1VVJ|1|RA|G|2389
1VVJ|1|RA|U|2390
1VVJ|1|RA|G|2391
1VVJ|1|RA|A|2392
1VVJ|1|RA|A|2393
1VVJ|1|RA|C|2394
1VVJ|1|RA|C|2395
*
1VVJ|1|RA|G|2421
1VVJ|1|RA|A|2422
1VVJ|1|RA|U|2423
1VVJ|1|RA|C|2424
1VVJ|1|RA|A|2425
1VVJ|1|RA|A|2426
1VVJ|1|RA|C|2427
1VVJ|1|RA|G|2428
1VVJ|1|RA|G|2429
1VVJ|1|RA|A|2430
1VVJ|1|RA|U|2431
1VVJ|1|RA|A|2432
1VVJ|1|RA|A|2433
1VVJ|1|RA|A|2434
1VVJ|1|RA|A|2435

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R1
50S ribosomal protein L28
Chain R6
50S ribosomal protein L34
Chain R8
tRNA acceptor end mimic
Chain RD
50S ribosomal protein L2
Chain RP
50S ribosomal protein L15

Coloring options:

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