Loop J6_1VW3

3D structure

PDB id: 1VW3 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the yeast mitochondrial large ribosomal subunit
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: CAUAAA*UAAAUUG*UAGUAAUAGAUAAAAAUAUG*CGAUAAU*AGU*AUG
Length: 46 nucleotides
Bulged bases: 1VW3|1|A|A|2316, 1VW3|1|A|U|2379, 1VW3|1|A|U|2380, 1VW3|1|A|U|2424, 1VW3|1|A|A|2425, 1VW3|1|A|A|2426, 1VW3|1|A|U|2427, 1VW3|1|A|A|2428, 1VW3|1|A|A|2430, 1VW3|1|A|A|2432, 1VW3|1|A|A|2433, 1VW3|1|A|A|2438, 1VW3|1|A|U|2611
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1VW3|1|A|C|2312
1VW3|1|A|A|2313
1VW3|1|A|U|2314
1VW3|1|A|A|2315
1VW3|1|A|A|2316
1VW3|1|A|A|2317
*
1VW3|1|A|U|2375
1VW3|1|A|A|2376
1VW3|1|A|A|2377
1VW3|1|A|A|2378
1VW3|1|A|U|2379
1VW3|1|A|U|2380
1VW3|1|A|G|2381
*
1VW3|1|A|U|2421
1VW3|1|A|A|2422
1VW3|1|A|G|2423
1VW3|1|A|U|2424
1VW3|1|A|A|2425
1VW3|1|A|A|2426
1VW3|1|A|U|2427
1VW3|1|A|A|2428
1VW3|1|A|G|2429
1VW3|1|A|A|2430
1VW3|1|A|U|2431
1VW3|1|A|A|2432
1VW3|1|A|A|2433
1VW3|1|A|A|2434
1VW3|1|A|A|2435
1VW3|1|A|A|2436
1VW3|1|A|U|2437
1VW3|1|A|A|2438
1VW3|1|A|U|2439
1VW3|1|A|G|2440
*
1VW3|1|A|C|2608
1VW3|1|A|G|2609
1VW3|1|A|A|2610
1VW3|1|A|U|2611
1VW3|1|A|A|2612
1VW3|1|A|A|2613
1VW3|1|A|U|2614
*
1VW3|1|A|A|2637
1VW3|1|A|G|2638
1VW3|1|A|U|2639
*
1VW3|1|A|A|2648
1VW3|1|A|U|2649
1VW3|1|A|G|2650

Current chains

Chain A: 21S ribosomal RNA

Nearby chains

No other chains within 10Å

J6_1VW3_001