Loop J6_1VX3

3D structure

PDB id: 1VX3 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: GACUG*CAAAGCAUC*GAUGUGAUUUCUG*CGGGA*UCUCUUAAGGUAGC*GCAUGAAUGGAUGAAC
Length: 62 nucleotides
Bulged bases: 1VX3|1|5|C|3771, 1VX3|1|5|U|3818
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1VX3|1|5|G|3634
1VX3|1|5|A|3635
1VX3|1|5|C|3636
1VX3|1|5|U|3637
1VX3|1|5|G|3638
*
1VX3|1|5|C|3650
1VX3|1|5|A|3651
1VX3|1|5|A|3652
1VX3|1|5|A|3653
1VX3|1|5|G|3654
1VX3|1|5|C|3655
1VX3|1|5|A|3656
1VX3|1|5|U|3657
1VX3|1|5|C|3658
*
1VX3|1|5|G|3686
1VX3|1|5|A|3687
1VX3|1|5|U|3688
1VX3|1|5|G|3689
1VX3|1|5|U|3690
1VX3|1|5|G|3691
1VX3|1|5|A|3692
1VX3|1|5|U|3693
1VX3|1|5|U|3694
1VX3|1|5|U|3695
1VX3|1|5|C|3696
1VX3|1|5|U|3697
1VX3|1|5|G|3698
*
1VX3|1|5|C|3752
1VX3|1|5|G|3753
1VX3|1|5|G|3754
1VX3|1|5|G|3755
1VX3|1|5|A|3756
*
1VX3|1|5|U|3768
1VX3|1|5|C|3769
1VX3|1|5|U|3770
1VX3|1|5|C|3771
1VX3|1|5|U|3772
1VX3|1|5|U|3773
1VX3|1|5|A|3774
1VX3|1|5|A|3775
1VX3|1|5|G|3776
1VX3|1|5|G|3777
1VX3|1|5|U|3778
1VX3|1|5|A|3779
1VX3|1|5|G|3780
1VX3|1|5|C|3781
*
1VX3|1|5|G|3811
1VX3|1|5|C|3812
1VX3|1|5|A|3813
1VX3|1|5|U|3814
1VX3|1|5|G|3815
1VX3|1|5|A|3816
1VX3|1|5|A|3817
1VX3|1|5|U|3818
1VX3|1|5|G|3819
1VX3|1|5|G|3820
1VX3|1|5|A|3821
1VX3|1|5|U|3822
1VX3|1|5|G|3823
1VX3|1|5|A|3824
1VX3|1|5|A|3825
1VX3|1|5|C|3826

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

No other chains within 10Å

J6_1VX3_001