J6_1VY4_003

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

1VY4|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY4|1|DA|G|44
1VY4|1|DA|C|45
*
1VY4|1|DA|G|179
1VY4|1|DA|G|180
1VY4|1|DA|A|181
1VY4|1|DA|A|182
1VY4|1|DA|C|183
*
1VY4|1|DA|G|214
1VY4|1|DA|G|215
1VY4|1|DA|A|216
1VY4|1|DA|G|217
1VY4|1|DA|A|218
1VY4|1|DA|G|219
1VY4|1|DA|G|220
1VY4|1|DA|A|221
1VY4|1|DA|A|222
1VY4|1|DA|A|223
1VY4|1|DA|G|224
*
1VY4|1|DA|C|231
1VY4|1|DA|G|232
1VY4|1|DA|A|233
1VY4|1|DA|C|234
1VY4|1|DA|U|235
*
1VY4|1|DA|A|262
1VY4|1|DA|C|263
1VY4|1|DA|C|264
1VY4|1|DA|A|265
1VY4|1|DA|G|266
*
1VY4|1|DA|C|426
1VY4|1|DA|U|427
1VY4|1|DA|A|428
1VY4|1|DA|A|429
1VY4|1|DA|G|430
1VY4|1|DA|U|431
1VY4|1|DA|A|432
1VY4|1|DA|C|433

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34