J6_1VY5_001

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

1VY5|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY5|1|BA|G|44
1VY5|1|BA|C|45
*
1VY5|1|BA|G|179
1VY5|1|BA|G|180
1VY5|1|BA|A|181
1VY5|1|BA|A|182
1VY5|1|BA|C|183
*
1VY5|1|BA|G|214
1VY5|1|BA|G|215
1VY5|1|BA|A|216
1VY5|1|BA|G|217
1VY5|1|BA|A|218
1VY5|1|BA|G|219
1VY5|1|BA|G|220
1VY5|1|BA|A|221
1VY5|1|BA|A|222
1VY5|1|BA|A|223
1VY5|1|BA|G|224
*
1VY5|1|BA|C|231
1VY5|1|BA|G|232
1VY5|1|BA|A|233
1VY5|1|BA|C|234
1VY5|1|BA|U|235
*
1VY5|1|BA|A|262
1VY5|1|BA|C|263
1VY5|1|BA|C|264
1VY5|1|BA|A|265
1VY5|1|BA|G|266
*
1VY5|1|BA|C|426
1VY5|1|BA|U|427
1VY5|1|BA|A|428
1VY5|1|BA|A|429
1VY5|1|BA|G|430
1VY5|1|BA|U|431
1VY5|1|BA|A|432
1VY5|1|BA|C|433

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34