J6_1VY6_001

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

1VY6|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|BA|G|44
1VY6|1|BA|C|45
*
1VY6|1|BA|G|179
1VY6|1|BA|G|180
1VY6|1|BA|A|181
1VY6|1|BA|A|182
1VY6|1|BA|C|183
*
1VY6|1|BA|G|214
1VY6|1|BA|G|215
1VY6|1|BA|A|216
1VY6|1|BA|G|217
1VY6|1|BA|A|218
1VY6|1|BA|G|219
1VY6|1|BA|G|220
1VY6|1|BA|A|221
1VY6|1|BA|A|222
1VY6|1|BA|A|223
1VY6|1|BA|G|224
*
1VY6|1|BA|C|231
1VY6|1|BA|G|232
1VY6|1|BA|A|233
1VY6|1|BA|C|234
1VY6|1|BA|U|235
*
1VY6|1|BA|A|262
1VY6|1|BA|C|263
1VY6|1|BA|C|264
1VY6|1|BA|A|265
1VY6|1|BA|G|266
*
1VY6|1|BA|C|426
1VY6|1|BA|U|427
1VY6|1|BA|A|428
1VY6|1|BA|A|429
1VY6|1|BA|G|430
1VY6|1|BA|U|431
1VY6|1|BA|A|432
1VY6|1|BA|C|433

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34