J6_1VY6_004
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 1VY6|1|DA|U|2076, 1VY6|1|DA|A|2388, 1VY6|1|DA|U|2390, 1VY6|1|DA|G|2428, 1VY6|1|DA|A|2430, 1VY6|1|DA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VY6|1|DA|U|2074
1VY6|1|DA|U|2075
1VY6|1|DA|U|2076
1VY6|1|DA|A|2077
*
1VY6|1|DA|U|2243
1VY6|1|DA|U|2244
1VY6|1|DA|U|2245
1VY6|1|DA|G|2246
*
1VY6|1|DA|C|2258
1VY6|1|DA|G|2259
*
1VY6|1|DA|C|2281
1VY6|1|DA|G|2282
1VY6|1|DA|C|2283
1VY6|1|DA|C|2284
*
1VY6|1|DA|G|2384
1VY6|1|DA|C|2385
1VY6|1|DA|C|2386
1VY6|1|DA|U|2387
1VY6|1|DA|A|2388
1VY6|1|DA|G|2389
1VY6|1|DA|U|2390
1VY6|1|DA|G|2391
1VY6|1|DA|A|2392
1VY6|1|DA|A|2393
1VY6|1|DA|C|2394
1VY6|1|DA|C|2395
*
1VY6|1|DA|G|2421
1VY6|1|DA|A|2422
1VY6|1|DA|U|2423
1VY6|1|DA|C|2424
1VY6|1|DA|A|2425
1VY6|1|DA|A|2426
1VY6|1|DA|C|2427
1VY6|1|DA|G|2428
1VY6|1|DA|G|2429
1VY6|1|DA|A|2430
1VY6|1|DA|U|2431
1VY6|1|DA|A|2432
1VY6|1|DA|A|2433
1VY6|1|DA|A|2434
1VY6|1|DA|A|2435
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D0
- 50S ribosomal protein L27
- Chain D1
- 50S ribosomal protein L28
- Chain D6
- 50S ribosomal protein L33
- Chain D8
- 50S ribosomal protein L35
- Chain DD
- 50S ribosomal protein L2
- Chain DP
- 50S ribosomal protein L15
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