J6_1W2B_001

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1W2B|1|0|A|193, 1W2B|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1W2B|1|0|G|41
1W2B|1|0|C|42
*
1W2B|1|0|G|149
1W2B|1|0|G|150
1W2B|1|0|A|151
1W2B|1|0|A|152
1W2B|1|0|C|153
*
1W2B|1|0|G|184
1W2B|1|0|G|185
1W2B|1|0|A|186
1W2B|1|0|A|187
1W2B|1|0|C|188
1W2B|1|0|A|189
1W2B|1|0|G|190
1W2B|1|0|A|191
1W2B|1|0|A|192
1W2B|1|0|A|193
1W2B|1|0|A|194
*
1W2B|1|0|U|202
1W2B|1|0|G|203
1W2B|1|0|A|204
1W2B|1|0|U|205
1W2B|1|0|G|206
*
1W2B|1|0|U|233
1W2B|1|0|A|234
1W2B|1|0|C|235
1W2B|1|0|A|236
1W2B|1|0|G|237
*
1W2B|1|0|C|433
1W2B|1|0|U|434
1W2B|1|0|A|435
1W2B|1|0|A|436
1W2B|1|0|A|437
1W2B|1|0|C|438
1W2B|1|0|A|439
1W2B|1|0|C|440

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15E

Chain Z

RIBOSOMAL PROTEIN L37E