J6_1Y69_001

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

1Y69|1|0|A|200, 1Y69|1|0|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|G|44
1Y69|1|0|C|45
*
1Y69|1|0|G|156
1Y69|1|0|G|157
1Y69|1|0|A|158
1Y69|1|0|A|159
1Y69|1|0|C|160
*
1Y69|1|0|G|191
1Y69|1|0|G|192
1Y69|1|0|A|193
1Y69|1|0|G|194
1Y69|1|0|A|195
1Y69|1|0|A|196
1Y69|1|0|G|197
1Y69|1|0|A|198
1Y69|1|0|A|199
1Y69|1|0|A|200
1Y69|1|0|G|201
*
1Y69|1|0|C|208
1Y69|1|0|G|209
1Y69|1|0|A|210
1Y69|1|0|U|211
1Y69|1|0|U|212
*
1Y69|1|0|A|239
1Y69|1|0|U|240
1Y69|1|0|C|241
1Y69|1|0|A|242
1Y69|1|0|G|243
*
1Y69|1|0|C|439
1Y69|1|0|U|440
1Y69|1|0|A|441
1Y69|1|0|A|442
1Y69|1|0|A|443
1Y69|1|0|U|444
1Y69|1|0|A|445
1Y69|1|0|C|446

Current chains

Chain 0

23S ribosomal RNA

Nearby chains