J6_1Y69_002

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

1Y69|1|0|U|2059, 1Y69|1|0|A|2367, 1Y69|1|0|U|2402, 1Y69|1|0|G|2407, 1Y69|1|0|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|U|2057
1Y69|1|0|U|2058
1Y69|1|0|U|2059
1Y69|1|0|A|2060
*
1Y69|1|0|U|2222
1Y69|1|0|U|2223
1Y69|1|0|U|2224
1Y69|1|0|G|2225
*
1Y69|1|0|C|2237
1Y69|1|0|G|2238
*
1Y69|1|0|C|2260
1Y69|1|0|G|2261
1Y69|1|0|C|2262
1Y69|1|0|C|2263
*
1Y69|1|0|G|2363
1Y69|1|0|C|2364
1Y69|1|0|U|2365
1Y69|1|0|U|2366
1Y69|1|0|A|2367
1Y69|1|0|G|2368
1Y69|1|0|U|2369
1Y69|1|0|G|2370
1Y69|1|0|A|2371
1Y69|1|0|A|2372
1Y69|1|0|C|2373
1Y69|1|0|C|2374
*
1Y69|1|0|G|2400
1Y69|1|0|A|2401
1Y69|1|0|U|2402
1Y69|1|0|C|2403
1Y69|1|0|A|2404
1Y69|1|0|A|2405
1Y69|1|0|C|2406
1Y69|1|0|G|2407
1Y69|1|0|G|2408
1Y69|1|0|A|2409
1Y69|1|0|U|2410
1Y69|1|0|A|2411
1Y69|1|0|A|2412
1Y69|1|0|A|2413
1Y69|1|0|A|2414

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27