J6_1YHQ_002

3D structure

PDB id

1YHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1YHQ|1|0|U|2117, 1YHQ|1|0|A|2425, 1YHQ|1|0|A|2465, 1YHQ|1|0|A|2467, 1YHQ|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YHQ|1|0|U|2115
1YHQ|1|0|U|2116
1YHQ|1|0|U|2117
1YHQ|1|0|A|2118
*
1YHQ|1|0|U|2276
1YHQ|1|0|U|2277
1YHQ|1|0|U|2278
1YHQ|1|0|G|2279
*
1YHQ|1|0|C|2292
1YHQ|1|0|G|2293
*
1YHQ|1|0|C|2315
1YHQ|1|0|G|2316
1YHQ|1|0|C|2317
1YHQ|1|0|C|2318
*
1YHQ|1|0|G|2421
1YHQ|1|0|U|2422
1YHQ|1|0|C|2423
1YHQ|1|0|U|2424
1YHQ|1|0|A|2425
1YHQ|1|0|G|2426
1YHQ|1|0|C|2427
1YHQ|1|0|G|2428
1YHQ|1|0|A|2429
1YHQ|1|0|A|2430
1YHQ|1|0|C|2431
1YHQ|1|0|C|2432
*
1YHQ|1|0|G|2459
1YHQ|1|0|A|2460
1YHQ|1|0|U|2461
1YHQ|1|0|G|2462
1YHQ|1|0|A|2463
1YHQ|1|0|C|2464
1YHQ|1|0|A|2465
1YHQ|1|0|G|2466
1YHQ|1|0|A|2467
1YHQ|1|0|A|2468
1YHQ|1|0|A|2469
1YHQ|1|0|A|2470

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e