J6_1YI2_002

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1YI2|1|0|U|2117, 1YI2|1|0|A|2425, 1YI2|1|0|A|2465, 1YI2|1|0|A|2467, 1YI2|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YI2|1|0|U|2115
1YI2|1|0|U|2116
1YI2|1|0|U|2117
1YI2|1|0|A|2118
*
1YI2|1|0|U|2276
1YI2|1|0|U|2277
1YI2|1|0|U|2278
1YI2|1|0|G|2279
*
1YI2|1|0|C|2292
1YI2|1|0|G|2293
*
1YI2|1|0|C|2315
1YI2|1|0|G|2316
1YI2|1|0|C|2317
1YI2|1|0|C|2318
*
1YI2|1|0|G|2421
1YI2|1|0|U|2422
1YI2|1|0|C|2423
1YI2|1|0|U|2424
1YI2|1|0|A|2425
1YI2|1|0|G|2426
1YI2|1|0|C|2427
1YI2|1|0|G|2428
1YI2|1|0|A|2429
1YI2|1|0|A|2430
1YI2|1|0|C|2431
1YI2|1|0|C|2432
*
1YI2|1|0|G|2459
1YI2|1|0|A|2460
1YI2|1|0|U|2461
1YI2|1|0|G|2462
1YI2|1|0|A|2463
1YI2|1|0|C|2464
1YI2|1|0|A|2465
1YI2|1|0|G|2466
1YI2|1|0|A|2467
1YI2|1|0|A|2468
1YI2|1|0|A|2469
1YI2|1|0|A|2470

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e