J6_1YIJ_001

3D structure

PDB id

1YIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Telithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1YIJ|1|0|A|193, 1YIJ|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YIJ|1|0|G|41
1YIJ|1|0|C|42
*
1YIJ|1|0|G|149
1YIJ|1|0|G|150
1YIJ|1|0|A|151
1YIJ|1|0|A|152
1YIJ|1|0|C|153
*
1YIJ|1|0|G|184
1YIJ|1|0|G|185
1YIJ|1|0|A|186
1YIJ|1|0|A|187
1YIJ|1|0|C|188
1YIJ|1|0|A|189
1YIJ|1|0|G|190
1YIJ|1|0|A|191
1YIJ|1|0|A|192
1YIJ|1|0|A|193
1YIJ|1|0|A|194
*
1YIJ|1|0|U|202
1YIJ|1|0|G|203
1YIJ|1|0|A|204
1YIJ|1|0|U|205
1YIJ|1|0|G|206
*
1YIJ|1|0|U|233
1YIJ|1|0|A|234
1YIJ|1|0|C|235
1YIJ|1|0|A|236
1YIJ|1|0|G|237
*
1YIJ|1|0|C|433
1YIJ|1|0|U|434
1YIJ|1|0|A|435
1YIJ|1|0|A|436
1YIJ|1|0|A|437
1YIJ|1|0|C|438
1YIJ|1|0|A|439
1YIJ|1|0|C|440

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain M

50S Ribosomal Protein L15E