J6_1YIJ_002

3D structure

PDB id

1YIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Telithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1YIJ|1|0|U|2117, 1YIJ|1|0|A|2425, 1YIJ|1|0|C|2427, 1YIJ|1|0|A|2465, 1YIJ|1|0|A|2467, 1YIJ|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YIJ|1|0|U|2115
1YIJ|1|0|U|2116
1YIJ|1|0|U|2117
1YIJ|1|0|A|2118
*
1YIJ|1|0|U|2276
1YIJ|1|0|U|2277
1YIJ|1|0|U|2278
1YIJ|1|0|G|2279
*
1YIJ|1|0|C|2292
1YIJ|1|0|G|2293
*
1YIJ|1|0|C|2315
1YIJ|1|0|G|2316
1YIJ|1|0|C|2317
1YIJ|1|0|C|2318
*
1YIJ|1|0|G|2421
1YIJ|1|0|U|2422
1YIJ|1|0|C|2423
1YIJ|1|0|U|2424
1YIJ|1|0|A|2425
1YIJ|1|0|G|2426
1YIJ|1|0|C|2427
1YIJ|1|0|G|2428
1YIJ|1|0|A|2429
1YIJ|1|0|A|2430
1YIJ|1|0|C|2431
1YIJ|1|0|C|2432
*
1YIJ|1|0|G|2459
1YIJ|1|0|A|2460
1YIJ|1|0|U|2461
1YIJ|1|0|G|2462
1YIJ|1|0|A|2463
1YIJ|1|0|C|2464
1YIJ|1|0|A|2465
1YIJ|1|0|G|2466
1YIJ|1|0|A|2467
1YIJ|1|0|A|2468
1YIJ|1|0|A|2469
1YIJ|1|0|A|2470

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e