J6_1YIT_001

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1YIT|1|0|A|193, 1YIT|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YIT|1|0|G|41
1YIT|1|0|C|42
*
1YIT|1|0|G|149
1YIT|1|0|G|150
1YIT|1|0|A|151
1YIT|1|0|A|152
1YIT|1|0|C|153
*
1YIT|1|0|G|184
1YIT|1|0|G|185
1YIT|1|0|A|186
1YIT|1|0|A|187
1YIT|1|0|C|188
1YIT|1|0|A|189
1YIT|1|0|G|190
1YIT|1|0|A|191
1YIT|1|0|A|192
1YIT|1|0|A|193
1YIT|1|0|A|194
*
1YIT|1|0|U|202
1YIT|1|0|G|203
1YIT|1|0|A|204
1YIT|1|0|U|205
1YIT|1|0|G|206
*
1YIT|1|0|U|233
1YIT|1|0|A|234
1YIT|1|0|C|235
1YIT|1|0|A|236
1YIT|1|0|G|237
*
1YIT|1|0|C|433
1YIT|1|0|U|434
1YIT|1|0|A|435
1YIT|1|0|A|436
1YIT|1|0|A|437
1YIT|1|0|C|438
1YIT|1|0|A|439
1YIT|1|0|C|440

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L37E

Chain M

50S RIBOSOMAL PROTEIN L15E