J6_1YIT_002

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1YIT|1|0|U|2117, 1YIT|1|0|A|2425, 1YIT|1|0|A|2465, 1YIT|1|0|A|2467, 1YIT|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YIT|1|0|U|2115
1YIT|1|0|U|2116
1YIT|1|0|U|2117
1YIT|1|0|A|2118
*
1YIT|1|0|U|2276
1YIT|1|0|U|2277
1YIT|1|0|U|2278
1YIT|1|0|G|2279
*
1YIT|1|0|C|2292
1YIT|1|0|G|2293
*
1YIT|1|0|C|2315
1YIT|1|0|G|2316
1YIT|1|0|C|2317
1YIT|1|0|C|2318
*
1YIT|1|0|G|2421
1YIT|1|0|U|2422
1YIT|1|0|C|2423
1YIT|1|0|U|2424
1YIT|1|0|A|2425
1YIT|1|0|G|2426
1YIT|1|0|C|2427
1YIT|1|0|G|2428
1YIT|1|0|A|2429
1YIT|1|0|A|2430
1YIT|1|0|C|2431
1YIT|1|0|C|2432
*
1YIT|1|0|G|2459
1YIT|1|0|A|2460
1YIT|1|0|U|2461
1YIT|1|0|G|2462
1YIT|1|0|A|2463
1YIT|1|0|C|2464
1YIT|1|0|A|2465
1YIT|1|0|G|2466
1YIT|1|0|A|2467
1YIT|1|0|A|2468
1YIT|1|0|A|2469
1YIT|1|0|A|2470

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L44E

Chain A

50S RIBOSOMAL PROTEIN L2P

Chain L

50S RIBOSOMAL PROTEIN L15P

Chain M

50S RIBOSOMAL PROTEIN L15E

Chain Q

50S RIBOSOMAL PROTEIN L21E