J6_1YJ9_001

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1YJ9|1|0|A|193, 1YJ9|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YJ9|1|0|G|41
1YJ9|1|0|C|42
*
1YJ9|1|0|G|149
1YJ9|1|0|G|150
1YJ9|1|0|A|151
1YJ9|1|0|A|152
1YJ9|1|0|C|153
*
1YJ9|1|0|G|184
1YJ9|1|0|G|185
1YJ9|1|0|A|186
1YJ9|1|0|A|187
1YJ9|1|0|C|188
1YJ9|1|0|A|189
1YJ9|1|0|G|190
1YJ9|1|0|A|191
1YJ9|1|0|A|192
1YJ9|1|0|A|193
1YJ9|1|0|A|194
*
1YJ9|1|0|U|202
1YJ9|1|0|G|203
1YJ9|1|0|A|204
1YJ9|1|0|U|205
1YJ9|1|0|G|206
*
1YJ9|1|0|U|233
1YJ9|1|0|A|234
1YJ9|1|0|C|235
1YJ9|1|0|A|236
1YJ9|1|0|G|237
*
1YJ9|1|0|C|433
1YJ9|1|0|U|434
1YJ9|1|0|A|435
1YJ9|1|0|A|436
1YJ9|1|0|A|437
1YJ9|1|0|C|438
1YJ9|1|0|A|439
1YJ9|1|0|C|440

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain C

50S ribosomal protein L4E

Chain M

50S Ribosomal Protein L15E