J6_1YJ9_002

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1YJ9|1|0|U|2117, 1YJ9|1|0|A|2425, 1YJ9|1|0|A|2465, 1YJ9|1|0|A|2467, 1YJ9|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YJ9|1|0|U|2115
1YJ9|1|0|U|2116
1YJ9|1|0|U|2117
1YJ9|1|0|A|2118
*
1YJ9|1|0|U|2276
1YJ9|1|0|U|2277
1YJ9|1|0|U|2278
1YJ9|1|0|G|2279
*
1YJ9|1|0|C|2292
1YJ9|1|0|G|2293
*
1YJ9|1|0|C|2315
1YJ9|1|0|G|2316
1YJ9|1|0|C|2317
1YJ9|1|0|C|2318
*
1YJ9|1|0|G|2421
1YJ9|1|0|U|2422
1YJ9|1|0|C|2423
1YJ9|1|0|U|2424
1YJ9|1|0|A|2425
1YJ9|1|0|G|2426
1YJ9|1|0|C|2427
1YJ9|1|0|G|2428
1YJ9|1|0|A|2429
1YJ9|1|0|A|2430
1YJ9|1|0|C|2431
1YJ9|1|0|C|2432
*
1YJ9|1|0|G|2459
1YJ9|1|0|A|2460
1YJ9|1|0|U|2461
1YJ9|1|0|G|2462
1YJ9|1|0|A|2463
1YJ9|1|0|C|2464
1YJ9|1|0|A|2465
1YJ9|1|0|G|2466
1YJ9|1|0|A|2467
1YJ9|1|0|A|2468
1YJ9|1|0|A|2469
1YJ9|1|0|A|2470

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E

Chain Q

50S ribosomal protein L21e