J6_28UH_002
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 28UH|1|a|U|2076, 28UH|1|a|A|2388, 28UH|1|a|U|2390, 28UH|1|a|G|2428, 28UH|1|a|A|2430, 28UH|1|a|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28UH|1|a|U|2074
28UH|1|a|U|2075
28UH|1|a|U|2076
28UH|1|a|A|2077
*
28UH|1|a|U|2243
28UH|1|a|U|2244
28UH|1|a|U|2245
28UH|1|a|G|2246
*
28UH|1|a|C|2258
28UH|1|a|U|2259
*
28UH|1|a|A|2281
28UH|1|a|G|2282
28UH|1|a|C|2283
28UH|1|a|A|2284
*
28UH|1|a|U|2384
28UH|1|a|C|2385
28UH|1|a|A|2386
28UH|1|a|U|2387
28UH|1|a|A|2388
28UH|1|a|G|2389
28UH|1|a|U|2390
28UH|1|a|G|2391
28UH|1|a|A|2392
28UH|1|a|U|2393
28UH|1|a|C|2394
28UH|1|a|C|2395
*
28UH|1|a|G|2421
28UH|1|a|C|2422
28UH|1|a|U|2423
28UH|1|a|C|2424
28UH|1|a|A|2425
28UH|1|a|A|2426
28UH|1|a|C|2427
28UH|1|a|G|2428
28UH|1|a|G|2429
28UH|1|a|A|2430
28UH|1|a|U|2431
28UH|1|a|A|2432
28UH|1|a|A|2433
28UH|1|a|A|2434
28UH|1|a|A|2435
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain k
- Large ribosomal subunit protein uL15
- Chain v
- Large ribosomal subunit protein bL27
- Chain w
- Large ribosomal subunit protein bL28
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