J6_2A2E_002

3D structure

PDB id

2A2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GACUCUGGAGCGGGGUGC*GG*CGGACAG*CCCCACCUGGAGCAAGG*CCGCUUGAGG*CCCCAGAUUGAUGACCGCCCACGACAGAAUC

Length

85 nucleotides

Bulged bases

2A2E|1|A|G|62||||2_554, 2A2E|1|A|G|68||||2_554, 2A2E|1|A|A|104||||2_554, 2A2E|1|A|C|105||||2_554, 2A2E|1|A|U|207||||2_554, 2A2E|1|A|C|212||||2_554, 2A2E|1|A|A|213||||2_554, 2A2E|1|A|A|214||||2_554, 2A2E|1|A|G|262||||2_554, 2A2E|1|A|C|263||||2_554, 2A2E|1|A|U|264||||2_554, 2A2E|1|A|U|265||||2_554, 2A2E|1|A|G|266||||2_554, 2A2E|1|A|A|267||||2_554, 2A2E|1|A|C|288||||2_554, 2A2E|1|A|C|289||||2_554, 2A2E|1|A|A|290||||2_554, 2A2E|1|A|G|291||||2_554, 2A2E|1|A|A|292||||2_554, 2A2E|1|A|U|293||||2_554, 2A2E|1|A|U|294||||2_554, 2A2E|1|A|G|295||||2_554, 2A2E|1|A|A|296||||2_554, 2A2E|1|A|U|297||||2_554, 2A2E|1|A|C|305||||2_554, 2A2E|1|A|A|306||||2_554, 2A2E|1|A|C|307||||2_554, 2A2E|1|A|G|308||||2_554, 2A2E|1|A|A|309||||2_554, 2A2E|1|A|C|310||||2_554, 2A2E|1|A|A|311||||2_554, 2A2E|1|A|G|312||||2_554, 2A2E|1|A|A|313||||2_554, 2A2E|1|A|A|314||||2_554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2A2E|1|A|G|56||||2_554
2A2E|1|A|A|57||||2_554
2A2E|1|A|C|58||||2_554
2A2E|1|A|U|59||||2_554
2A2E|1|A|C|60||||2_554
2A2E|1|A|U|61||||2_554
2A2E|1|A|G|62||||2_554
2A2E|1|A|G|63||||2_554
2A2E|1|A|A|64||||2_554
2A2E|1|A|G|65||||2_554
2A2E|1|A|C|66||||2_554
2A2E|1|A|G|67||||2_554
2A2E|1|A|G|68||||2_554
2A2E|1|A|G|69||||2_554
2A2E|1|A|G|70||||2_554
2A2E|1|A|U|71||||2_554
2A2E|1|A|G|72||||2_554
2A2E|1|A|C|73||||2_554
*
2A2E|1|A|G|87||||2_554
2A2E|1|A|G|88||||2_554
*
2A2E|1|A|C|101||||2_554
2A2E|1|A|G|102||||2_554
2A2E|1|A|G|103||||2_554
2A2E|1|A|A|104||||2_554
2A2E|1|A|C|105||||2_554
2A2E|1|A|A|106||||2_554
2A2E|1|A|G|107||||2_554
*
2A2E|1|A|C|200||||2_554
2A2E|1|A|C|201||||2_554
2A2E|1|A|C|202||||2_554
2A2E|1|A|C|203||||2_554
2A2E|1|A|A|204||||2_554
2A2E|1|A|C|205||||2_554
2A2E|1|A|C|206||||2_554
2A2E|1|A|U|207||||2_554
2A2E|1|A|G|208||||2_554
2A2E|1|A|G|209||||2_554
2A2E|1|A|A|210||||2_554
2A2E|1|A|G|211||||2_554
2A2E|1|A|C|212||||2_554
2A2E|1|A|A|213||||2_554
2A2E|1|A|A|214||||2_554
2A2E|1|A|G|215||||2_554
2A2E|1|A|G|216||||2_554
*
2A2E|1|A|C|260||||2_554
2A2E|1|A|C|261||||2_554
2A2E|1|A|G|262||||2_554
2A2E|1|A|C|263||||2_554
2A2E|1|A|U|264||||2_554
2A2E|1|A|U|265||||2_554
2A2E|1|A|G|266||||2_554
2A2E|1|A|A|267||||2_554
2A2E|1|A|G|268||||2_554
2A2E|1|A|G|269||||2_554
*
2A2E|1|A|C|286||||2_554
2A2E|1|A|C|287||||2_554
2A2E|1|A|C|288||||2_554
2A2E|1|A|C|289||||2_554
2A2E|1|A|A|290||||2_554
2A2E|1|A|G|291||||2_554
2A2E|1|A|A|292||||2_554
2A2E|1|A|U|293||||2_554
2A2E|1|A|U|294||||2_554
2A2E|1|A|G|295||||2_554
2A2E|1|A|A|296||||2_554
2A2E|1|A|U|297||||2_554
2A2E|1|A|G|298||||2_554
2A2E|1|A|A|299||||2_554
2A2E|1|A|C|300||||2_554
2A2E|1|A|C|301||||2_554
2A2E|1|A|G|302||||2_554
2A2E|1|A|C|303||||2_554
2A2E|1|A|C|304||||2_554
2A2E|1|A|C|305||||2_554
2A2E|1|A|A|306||||2_554
2A2E|1|A|C|307||||2_554
2A2E|1|A|G|308||||2_554
2A2E|1|A|A|309||||2_554
2A2E|1|A|C|310||||2_554
2A2E|1|A|A|311||||2_554
2A2E|1|A|G|312||||2_554
2A2E|1|A|A|313||||2_554
2A2E|1|A|A|314||||2_554
2A2E|1|A|U|315||||2_554
2A2E|1|A|C|316||||2_554

Current chains

Chain A

RNA subunit of RNase P

Nearby chains