J6_2D3O_001

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

2D3O|1|0|A|200, 2D3O|1|0|A|242, 2D3O|1|0|U|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|G|44
2D3O|1|0|C|45
*
2D3O|1|0|G|156
2D3O|1|0|G|157
2D3O|1|0|A|158
2D3O|1|0|A|159
2D3O|1|0|C|160
*
2D3O|1|0|G|191
2D3O|1|0|G|192
2D3O|1|0|A|193
2D3O|1|0|G|194
2D3O|1|0|A|195
2D3O|1|0|A|196
2D3O|1|0|G|197
2D3O|1|0|A|198
2D3O|1|0|A|199
2D3O|1|0|A|200
2D3O|1|0|G|201
*
2D3O|1|0|C|208
2D3O|1|0|G|209
2D3O|1|0|A|210
2D3O|1|0|U|211
2D3O|1|0|U|212
*
2D3O|1|0|A|239
2D3O|1|0|U|240
2D3O|1|0|C|241
2D3O|1|0|A|242
2D3O|1|0|G|243
*
2D3O|1|0|C|439
2D3O|1|0|U|440
2D3O|1|0|A|441
2D3O|1|0|A|442
2D3O|1|0|A|443
2D3O|1|0|U|444
2D3O|1|0|A|445
2D3O|1|0|C|446

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains