J6_2O45_002

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUACUCC

Length

41 nucleotides

Bulged bases

2O45|1|A|A|200, 2O45|1|A|A|242, 2O45|1|A|A|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|G|42
2O45|1|A|A|43
2O45|1|A|G|44
2O45|1|A|C|45
*
2O45|1|A|G|156
2O45|1|A|G|157
2O45|1|A|A|158
2O45|1|A|A|159
2O45|1|A|C|160
*
2O45|1|A|G|191
2O45|1|A|G|192
2O45|1|A|A|193
2O45|1|A|G|194
2O45|1|A|A|195
2O45|1|A|A|196
2O45|1|A|G|197
2O45|1|A|A|198
2O45|1|A|A|199
2O45|1|A|A|200
2O45|1|A|G|201
*
2O45|1|A|C|208
2O45|1|A|G|209
2O45|1|A|A|210
2O45|1|A|U|211
2O45|1|A|U|212
*
2O45|1|A|A|239
2O45|1|A|U|240
2O45|1|A|C|241
2O45|1|A|A|242
2O45|1|A|G|243
*
2O45|1|A|C|439
2O45|1|A|U|440
2O45|1|A|A|441
2O45|1|A|A|442
2O45|1|A|A|443
2O45|1|A|U|444
2O45|1|A|A|445
2O45|1|A|C|446
2O45|1|A|U|447
2O45|1|A|C|448
2O45|1|A|C|449

Current chains

Chain A

23S rRNA

Nearby chains